MSroi: A pre-processing tool for mass spectrometry-based studies

نویسندگان

چکیده

Mass spectrometry has become one of the methods choice in analytical field due to its high sensitivity and selectivity retrieve structural information allowing univocal identification compounds. From a chemometric point view, mass generates challenging datasets because their large size with thousands mass-to-charge values inherent complexity associated multicomponent mixtures analysed. These unresolved challenges have brought about development various computational approaches enable pre-processing these datasets. Here, we present MSroi software an attempt provide one-for-all solution compression allows analysis variety obtained using different acquisition such as direct infusion, hyphenated separation technique or imaging. In all cases, produces highly compressed data table containing measured intensities for relevant charge at each considered retention time pixel. This output can be used input feature detection step in, instance, ROIMCR approach, independently subsequent multivariate analysis. • tool is presented. The suitable processing chromatographic imaging Other further analyze output.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Pre-Processing Mass Spectrometry Data

Mass spectrometry is actively being used to discover disease-related proteomic patterns in complex mixtures of proteins derived from tissue samples or from easily obtained biological fluids. The potential importance of these clinical applications has made the development of better methods for processing and analyzing the data an active area of research. In this chapter, we overview basic concep...

متن کامل

Data pre-processing in liquid chromatography-mass spectrometry-based proteomics

MOTIVATION In a liquid chromatography-mass spectrometry (LC-MS)-based expressional proteomics, multiple samples from different groups are analyzed in parallel. It is necessary to develop a data mining system to perform peak quantification, peak alignment and data quality assurance. RESULTS We have developed an algorithm for spectrum deconvolution. A two-step alignment algorithm is proposed fo...

متن کامل

A dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry data

MOTIVATION Mass spectrometry (MS)-based proteomics is one of the most commonly used research techniques for identifying and characterizing proteins in biological and medical research. The identification of a protein is the critical first step in elucidating its biological function. Successful protein identification depends on various interrelated factors, including effective analysis of MS data...

متن کامل

A wavelet-based data pre-processing analysis approach in mass spectrometry

Recently, mass spectrometry analysis has a become an effective and rapid approach in detecting early-stage cancer. To identify proteomic patterns in serum to discriminate cancer patients from normal individuals, machine-learning methods, such as feature selection and classification, have already been involved in the analysis of mass spectrometry (MS) data with some success. However, the perform...

متن کامل

Mass Spectrometry-Based Proteomics for Pre-Eclampsia and Preterm Birth

Pregnancy-related complications such as pre-eclampsia and preterm birth now represent a notable burden of adverse health. Pre-eclampsia is a hypertensive disorder unique to pregnancy. It is an important cause of maternal death worldwide and a leading cause of fetal growth restriction and iatrogenic prematurity. Fifteen million infants are born preterm each year globally, but more than one milli...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Chemometrics and Intelligent Laboratory Systems

سال: 2021

ISSN: ['1873-3239', '0169-7439']

DOI: https://doi.org/10.1016/j.chemolab.2021.104333